Tag
HLA
23 genetic variants with this tag.
| RSID | Gene | Description | Category | ||
|---|---|---|---|---|---|
| rs12191877 | HLA-C Tag for *06:02 | Tag SNP for HLA-C*06:02, the strongest genetic risk factor for psoriasis, det... | Psoriasis & Spondyloarthropathy | Established | |
| rs1154155 | TRA | T-cell receptor alpha locus variant associated with narcolepsy susceptibility... | Hormones & Sleep | Strong | |
| rs17482078 | ERAP1 R725Q | Missense variant (Arg725Gln) in the ERAP1 peptide-binding domain that reduces... | Psoriasis & Spondyloarthropathy | Strong | |
| rs2187668 | HLA-DQA1 DQ2.5 tag | Tag SNP for HLA-DQ2.5 haplotype, the strongest genetic risk factor for celiac... | Interferon Signaling & Systemic Autoimmune | Established | |
| rs3077 | HLA-DPA1 HLA-DPA1 3′ UTR variant | Regulatory variant in the 3′ UTR of HLA-DPA1 that controls surface expression... | Interferon Signaling & Systemic Autoimmune | Strong | |
| rs419788 | SKIV2L | Intronic SKIV2L variant in the MHC class III region; the T allele tags an ind... | Interferon Signaling & Systemic Autoimmune | Moderate | |
| rs3129878 | HLA-DRA HLA-DRA Variant | Intronic variant in the HLA class II region associated with nonobstructive az... | Endometriosis & Uterine Health | Strong | |
| rs660895 | HLA-DRB1 | Regulatory tag SNP in the HLA-DRB1 region; the G allele marks the HLA-DRB1*04... | Interferon Signaling & Systemic Autoimmune | Strong | |
| rs6910071 | TSBP1 | MHC-region intronic variant tagging HLA-DRB1 shared epitope haplotypes; G all... | Interferon Signaling & Systemic Autoimmune | Strong | |
| rs4349859 | HLA-B HLA-B27 proxy | Intronic tag SNP located 41 kb centromeric of HLA-B and 5.4 kb telomeric of M... | Psoriasis & Spondyloarthropathy | Established | |
| rs4406273 | HLA-C | Near-HLA-C intergenic variant that tags HLA-C*06:02 haplotype, conferring ris... | Psoriasis & Spondyloarthropathy | Strong | |
| rs498422 | LOC101929163 LOC101929163 Variant | Intronic variant in TSBP1-AS1 (LOC101929163), a non-coding antisense RNA in t... | Endometriosis & Uterine Health | Emerging | |
| rs7770370 | HLA-DPB1 | Intronic tag SNP in HLA-DPB1 (and upstream of HLA-DPA1) that marks the HLA-DP... | Interferon Signaling & Systemic Autoimmune | Strong | |
| rs9268839 | HLA-DRA | Intergenic tag SNP upstream of HLA-DRA; the G allele is the primary GWAS sign... | Interferon Signaling & Systemic Autoimmune | Strong | |
| rs9277535 | HLA-DPB1 | 3' UTR eQTL that reduces HLA-DPB1 expression, impairing antigen presentation ... | Interferon Signaling & Systemic Autoimmune | Strong | |
| rs17612852 | HLA-DQA1 HLA-DQA1 Peanut Allergy Tag SNP | Intronic tag SNP in HLA-DQA1 in strong LD with HLA-DQA1*01:02; the G allele i... | Allergy & Atopic Disease | Strong | |
| rs2040410 | HLA-DQA1 HLA-DQ Autoimmune Tag SNP | Intronic tag SNP near HLA-DQA1 that marks the DR3 (DRB1*0301-DQA1*0501-DQB1*0... | Allergy & Atopic Disease | Strong | |
| rs3129934 | HLA-DRB5 DR15 haplotype tag | Tag SNP for HLA-DRB5*01:01 on the DR15 susceptibility haplotype, physically n... | Neurology & Cognition | Strong | |
| rs3135388 | HLA-DRA Tag for DRB1*15:01 | Tag SNP for HLA-DRB1*15:01 (physically located near HLA-DRA), the strongest g... | Neurology & Cognition | Established | |
| rs7192 | HLA-DRA HLA-DRA Leu242Val | Missense variant (Leu242Val) in the HLA-DRA alpha chain; the T allele tags HL... | Allergy & Atopic Disease | Strong | |
| rs9275596 | HLA-DQ HLA-DQ Region Peanut Allergy Locus | Intergenic tag SNP between HLA-DQB1 and HLA-DQA2 tagging the HLA-DQA1*01:02 r... | Allergy & Atopic Disease | Strong | |
| rs9271366 | HLA-DQA1 eQTL | Intergenic eQTL near HLA-DQA1 that tags the DR15 haplotype (DRB1*15:01/DQA1*0... | Neurology & Cognition | Established | |
| rs9275328 | HLA-DQB1 DQB1 region | Intergenic SNP between HLA-DQB1 and HLA-DQA2 that tags the DQB1*06:02 allele,... | Neurology & Cognition | Strong |