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rs34311866 — TMEM175
Chromosome 4 Risk Allele C Category Neurology & Cognition Parkinson's, Neurodegeneration, Autophagy, Neurological Risk, Cognitive Decline, Neuroprotection

Lysosomal K+/H+ channel variant (p.Met393Thr) that impairs lysosomal pH regulation, slows alpha-synuclein clearance, and increases risk for Parkinson's disease and REM sleep behavior disorder

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rs3765467 — GLP1R Arg131Gln
Chromosome 6 Risk Allele A Category Pharmacogenomics Drug Response, Diabetes, Obesity, Pharmacogenomics

Missense variant in the GLP-1 receptor that alters drug response to GLP-1 agonists (Ozempic, Wegovy, Saxenda) and DPP-4 inhibitors, with genome-wide significant protection against type 2 diabetes in East Asians

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rs3776467 — MTRR
Chromosome 5 Risk Allele A Category Methylation & Detox Methylation, B Vitamins, Homocysteine, Cancer Risk, Methylation & Detox

Intronic MTRR variant with sex-specific association with DNA methylation patterning in one-carbon metabolism

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rs516134 — RGS16 RGS16 chronotype variant
Chromosome 1 Risk Allele C Category Hormones & Sleep Chronotype, Circadian, Sleep, Hormones, Brain Health

Regulatory variant ~20 kb downstream of RGS16 that influences circadian chronotype via cAMP signaling in the suprachiasmatic nucleus; the C allele is associated with morningness preference (OR 1.21) in the largest replicated chronotype GWAS

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rs6507931 — LIPG
Chromosome 18 Risk Allele T Category Triglycerides & Fatty Acids Cholesterol, Cardiovascular, Fat Metabolism, Diet, Omega-3

Intronic LIPG variant that modulates HDL cholesterol levels, with strongest effects on HDL particle size and concentration in physically inactive individuals

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rs7649970 — PPARG PPARG C-689T
Chromosome 3 Risk Allele T Category Fat Storage & Energy Fat Metabolism, Cardiovascular, Metabolic, Insulin, LDL Cholesterol, Adipogenesis

PPARG PPARγ2 P2 promoter variant that reduces basal promoter activity, elevating LDL-cholesterol and increasing coronary artery disease risk independently of traditional cardiovascular risk factors

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rs2297839 — CHI3L1 CHI3L1 Intron Variant
Chromosome 1 Risk Allele C Category Allergy & Atopic Disease Asthma, Inflammation, Biomarkers, Lung Health, Hypertension, Immune Response

Intronic variant in CHI3L1 associated with circulating YKL-40 levels and modulation of hypertension risk; the T allele is linked to lower YKL-40 output and a reduced risk of hypertension, extending the known allergy-relevant inflammatory axis of the CHI3L1 locus into cardiovascular biology

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rs356182 — SNCA
Chromosome 4 Risk Allele G Category Neurology & Cognition Neurological Risk, Parkinson's, Neuroprotection, Brain Health, Oxidative Stress, Exercise

Parkinson's disease GWAS risk variant affecting alpha-synuclein expression and neuronal differentiation

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rs3788189 — SLC19A1 SLC19A1 IVS2 variant
Chromosome 21 Risk Allele G Category Methylation & Detox Methylation & Detox, Folate, Pharmacogenomics, Cancer Treatment, Drug Metabolism

Intronic variant in the folate transporter gene associated with pemetrexed treatment outcomes and folate pathway efficiency in antifolate chemotherapy

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rs3791033 — KDM4A
Chromosome 1 Risk Allele C Category Pharmacogenomics Pharmacogenomics, Drug Metabolism, Pain Sensitivity, Chronic Pain, Addiction, Epigenetics

Intronic variant in KDM4A histone demethylase associated with problematic opioid prescription use in a 132,113-participant GWAS

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